http://www.phosphatome.net/wiki/index.php?action=history&feed=atom&title=Phosphatase_GeneID_AqueP159
Phosphatase GeneID AqueP159 - Revision history
2026-04-06T11:02:31Z
Revision history for this page on the wiki
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http://www.phosphatome.net/wiki/index.php?title=Phosphatase_GeneID_AqueP159&diff=3044&oldid=prev
Mark at 19:45, 30 September 2015
2015-09-30T19:45:29Z
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<td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 19:45, 30 September 2015</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>=== AqueP159, AqueP160, AqueP161: redundant? ===</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>=== AqueP159, AqueP160, AqueP161: redundant? ===</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>AqueP159 is updated and one residue longer than [http://metazoa.ensembl.org/Amphimedon_queenslandica/Gene/Summary?db=core;g=Aqu1.210066;r=Contig12601:26303-26448;t=PAC:15708594;tl=PfOgZb3yiZR6ToRv-2132434-42902643 Aqu1.210066 (PAC:15708594)].</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>AqueP159 is updated and one residue longer than [http://metazoa.ensembl.org/Amphimedon_queenslandica/Gene/Summary?db=core;g=Aqu1.210066;r=Contig12601:26303-26448;t=PAC:15708594;tl=PfOgZb3yiZR6ToRv-2132434-42902643 Aqu1.210066 (PAC:15708594)]<ins class="diffchange diffchange-inline">. By BLASTNing the genomic sequence against sponge genome in Ensemblgenomes.org, the best hit except itself is 98.6% identity and overlaps with the region encoding AqueP161, i.e. [http://metazoa.ensembl.org/Amphimedon_queenslandica/Gene/Summary?db=core;g=Aqu1.219849;r=Contig13380:149683-152215;t=PAC:15718377;tl=m5wWoi1EVo0CcjBw-2132436-42902660 Aqu1.219849 (PAC:15718377)] on Contig13380. We currently annotate AqueP160 as a gene different from AqueP161 and AqueP160</ins>.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">AqueP160 is a new gene model predicted from a short contig Contig110 (only 870 bp). By BLASTNing the genomic sequence against sponge genome in Ensemblgenomes.org, the best hit except itself is 98.6% identity and overlaps with the region encoding AqueP161, i.e. [http://metazoa.ensembl.org/Amphimedon_queenslandica/Gene/Summary?db=core;g=Aqu1.219849;r=Contig13380:149683-152215;t=PAC:15718377;tl=m5wWoi1EVo0CcjBw-2132436-42902660 Aqu1.219849 (PAC:15718377)] on Contig13380. We currently annotate AqueP160 as a gene different from AqueP161 and AqueP159.</del></div></td><td colspan="2"> </td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>>Contig110 dna:scaffold scaffold:Aqu1:Contig110:716:840:1</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>><ins class="diffchange diffchange-inline">AqueP159_genomic Contig12601 dna:scaffold scaffold:Aqu1:Contig12601:26303:26448:1</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">TCACCATAAAGACTGCTGGTGTAAGTTTCGACTCAGAACCGAGCGGACATCTTGCGTGAA</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">TCTCAGCGAATCTAAAAATGGTAAGAGATCAAGCAAGTCCGTATCAAGAGGGTCTGAGAA</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">CCACGAGGTTATCGGAATAGCATTGT</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">AqueP160 is a new gene model predicted from a short contig Contig110 (only 870 bp). By BLASTNing the genomic sequence against sponge genome in Ensemblgenomes.org, the best hit except itself is 98.6% identity and overlaps with the region encoding AqueP161, i.e. [http://metazoa.ensembl.org/Amphimedon_queenslandica/Gene/Summary?db=core;g=Aqu1.219849;r=Contig13380:149683-152215;t=PAC:15718377;tl=m5wWoi1EVo0CcjBw-2132436-42902660 Aqu1.219849 (PAC:15718377)] on Contig13380. We currently annotate AqueP160 as a gene different from AqueP161 and AqueP159. </ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">However, we cannot exclude AqueP159 and AqueP160 is encoded by the same gene, because i) they are different part of DULLARD in protein sequence, that is why their protein and genomic sequences do not overlap with each other, ii) we cannot build longer gene models from the two contigs Contig12601 and Contig110. Contig12601 is 26501 bp long and has two long regions of gaps; Contig110 is very short 870 bp.</ins></div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">>AqueP160_genomic </ins>Contig110 dna:scaffold scaffold:Aqu1:Contig110:716:840:1</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>CTGACCAGGATTTCCCCTATAAGCTGAAGGTGAATTATCAAGTATAAAAATGTTGCTAAG</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>CTGACCAGGATTTCCCCTATAAGCTGAAGGTGAATTATCAAGTATAAAAATGTTGCTAAG</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>ATCTTCACTTATCATTGAGAGATTCTTAGTGTAGCCATTCATATCCATCGTACAGTCCTT</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>ATCTTCACTTATCATTGAGAGATTCTTAGTGTAGCCATTCATATCCATCGTACAGTCCTT</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>GAGAG</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>GAGAG</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>AqueP161 is identical to [http://metazoa.ensembl.org/Amphimedon_queenslandica/Gene/Summary?db=core;g=Aqu1.219849;r=Contig13380:149683-152215;t=PAC:15718377;tl=m5wWoi1EVo0CcjBw-2132436-42902660 Aqu1.219849 (PAC:15718377)].</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>AqueP161 is identical to [http://metazoa.ensembl.org/Amphimedon_queenslandica/Gene/Summary?db=core;g=Aqu1.219849;r=Contig13380:149683-152215;t=PAC:15718377;tl=m5wWoi1EVo0CcjBw-2132436-42902660 Aqu1.219849 (PAC:15718377)].</div></td></tr>
</table>
Mark
http://www.phosphatome.net/wiki/index.php?title=Phosphatase_GeneID_AqueP159&diff=3043&oldid=prev
Mark: Created page with "=== AqueP159, AqueP160, AqueP161: redundant? === AqueP159 is updated and one residue longer than [http://metazoa.ensembl.org/Amphimedon_queenslandica/Gene/Summary?db=core;g=Aq..."
2015-09-30T19:32:47Z
<p>Created page with "=== AqueP159, AqueP160, AqueP161: redundant? === AqueP159 is updated and one residue longer than [http://metazoa.ensembl.org/Amphimedon_queenslandica/Gene/Summary?db=core;g=Aq..."</p>
<p><b>New page</b></p><div>=== AqueP159, AqueP160, AqueP161: redundant? ===<br />
AqueP159 is updated and one residue longer than [http://metazoa.ensembl.org/Amphimedon_queenslandica/Gene/Summary?db=core;g=Aqu1.210066;r=Contig12601:26303-26448;t=PAC:15708594;tl=PfOgZb3yiZR6ToRv-2132434-42902643 Aqu1.210066 (PAC:15708594)].<br />
<br />
AqueP160 is a new gene model predicted from a short contig Contig110 (only 870 bp). By BLASTNing the genomic sequence against sponge genome in Ensemblgenomes.org, the best hit except itself is 98.6% identity and overlaps with the region encoding AqueP161, i.e. [http://metazoa.ensembl.org/Amphimedon_queenslandica/Gene/Summary?db=core;g=Aqu1.219849;r=Contig13380:149683-152215;t=PAC:15718377;tl=m5wWoi1EVo0CcjBw-2132436-42902660 Aqu1.219849 (PAC:15718377)] on Contig13380. We currently annotate AqueP160 as a gene different from AqueP161 and AqueP159.<br />
<br />
>Contig110 dna:scaffold scaffold:Aqu1:Contig110:716:840:1<br />
CTGACCAGGATTTCCCCTATAAGCTGAAGGTGAATTATCAAGTATAAAAATGTTGCTAAG<br />
ATCTTCACTTATCATTGAGAGATTCTTAGTGTAGCCATTCATATCCATCGTACAGTCCTT<br />
GAGAG<br />
<br />
AqueP161 is identical to [http://metazoa.ensembl.org/Amphimedon_queenslandica/Gene/Summary?db=core;g=Aqu1.219849;r=Contig13380:149683-152215;t=PAC:15718377;tl=m5wWoi1EVo0CcjBw-2132436-42902660 Aqu1.219849 (PAC:15718377)].</div>
Mark