http://www.phosphatome.net/wiki/index.php?action=history&feed=atom&title=Phosphatase_GeneID_SpurP124 Phosphatase GeneID SpurP124 - Revision history 2026-04-10T22:18:00Z Revision history for this page on the wiki MediaWiki 1.22.4 http://www.phosphatome.net/wiki/index.php?title=Phosphatase_GeneID_SpurP124&diff=3171&oldid=prev Mark at 19:37, 6 October 2015 2015-10-06T19:37:27Z <p></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td> <td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 19:37, 6 October 2015</td> </tr><tr><td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">SpurP124 locates in short contig and its sequence is incomplete.</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>SpurP124, SpurP125, SpurP126, Spur200 are partially identical in protein sequence. To find out whether they are encoded by different genes:</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>SpurP124, SpurP125, SpurP126, Spur200 are partially identical in protein sequence. To find out whether they are encoded by different genes:</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr> </table> Mark http://www.phosphatome.net/wiki/index.php?title=Phosphatase_GeneID_SpurP124&diff=3170&oldid=prev Mark at 19:36, 6 October 2015 2015-10-06T19:36:34Z <p></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td> <td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 19:36, 6 October 2015</td> </tr><tr><td colspan="2" class="diff-lineno">Line 6:</td> <td colspan="2" class="diff-lineno">Line 6:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>ACTIONS&#160; &#160; &#160; QUERY&#160; &#160; &#160; &#160; &#160; SCORE START&#160; END QSIZE IDENTITY CHRO STRAND&#160; START&#160; &#160; END&#160; &#160; &#160; SPAN &#160;</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>ACTIONS&#160; &#160; &#160; QUERY&#160; &#160; &#160; &#160; &#160; SCORE START&#160; END QSIZE IDENTITY CHRO STRAND&#160; START&#160; &#160; END&#160; &#160; &#160; SPAN &#160;</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>browser details SpurP124&#160; &#160; &#160; &#160; 925&#160; &#160; 1&#160; 309&#160; 448 100.0%&#160; Scaffold67922&#160; +-&#160; &#160; &#160; 2510&#160; &#160; &#160; 5486&#160; 2977 &#160;</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>browser details SpurP124&#160; &#160; &#160; &#160; 925&#160; &#160; 1&#160; 309&#160; 448 100.0%&#160; Scaffold67922&#160; +-&#160; &#160; &#160; 2510&#160; &#160; &#160; 5486&#160; 2977 &#160;</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr> </table> Mark http://www.phosphatome.net/wiki/index.php?title=Phosphatase_GeneID_SpurP124&diff=3030&oldid=prev Mark at 23:56, 29 September 2015 2015-09-29T23:56:51Z <p></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td> <td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 23:56, 29 September 2015</td> </tr><tr><td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>SpurP124, SpurP125, SpurP126, Spur200 are partially identical in protein sequence. To find out whether they are encoded by different genes:</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>SpurP124, SpurP125, SpurP126, Spur200 are partially identical in protein sequence. To find out whether they are encoded by different genes:</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del class="diffchange diffchange-inline">1. </del>BLAT the <del class="diffchange diffchange-inline">three </del>sequences. SpurP124 is encoded by Scaffold67922; SpurP125 is encoded by Scaffold20002; SpurP126 is encoded by Scaffold86115; SpurP200 is encoded by Scaffold52488.</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>BLAT the <ins class="diffchange diffchange-inline">four </ins>sequences. SpurP124 is encoded by Scaffold67922 <ins class="diffchange diffchange-inline">+ Scaffold86115/Scaffold20002</ins>; SpurP125 is encoded by <ins class="diffchange diffchange-inline">Scaffold86115/</ins>Scaffold20002; SpurP126 is encoded by Scaffold86115; SpurP200 is encoded by Scaffold52488.</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>Below are BLAT results:</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>Below are BLAT results:</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>ACTIONS&#160; &#160; &#160; QUERY&#160; &#160; &#160; &#160; &#160; SCORE START&#160; END QSIZE IDENTITY CHRO STRAND&#160; START&#160; &#160; END&#160; &#160; &#160; SPAN</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>ACTIONS&#160; &#160; &#160; QUERY&#160; &#160; &#160; &#160; &#160; SCORE START&#160; END QSIZE IDENTITY CHRO STRAND&#160; START&#160; &#160; END&#160; &#160; &#160; SPAN &#160;</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>browser details SpurP124&#160; &#160; &#160; &#160; 925&#160; &#160; 1&#160; 309&#160; 448 100.0%&#160; Scaffold67922&#160; +-&#160; &#160; &#160; 2510&#160; &#160; &#160; 5486&#160; 2977</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>browser details SpurP124&#160; &#160; &#160; &#160; 925&#160; &#160; 1&#160; 309&#160; 448 100.0%&#160; Scaffold67922&#160; +-&#160; &#160; &#160; 2510&#160; &#160; &#160; 5486&#160; 2977 &#160;</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>browser details SpurP124&#160; &#160; &#160; &#160; 913&#160; &#160; 1&#160; 309&#160; 448&#160; 99.4%&#160; Scaffold52488&#160; ++&#160; &#160; 158719&#160; &#160; 162171&#160; 3453</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>browser details SpurP124&#160; &#160; &#160; &#160; 913&#160; &#160; 1&#160; 309&#160; 448&#160; 99.4%&#160; Scaffold52488&#160; ++&#160; &#160; 158719&#160; &#160; 162171&#160; 3453</div></td></tr> <tr><td colspan="2" class="diff-lineno">Line 24:</td> <td colspan="2" class="diff-lineno">Line 24:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>browser details SpurP126&#160; &#160; &#160; &#160; 302&#160; &#160; 95&#160; 197&#160; 601&#160; 99.1%&#160; Scaffold33476&#160; ++&#160; &#160; &#160; &#160; 582&#160; &#160; &#160; 1307&#160; &#160; 726</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>browser details SpurP126&#160; &#160; &#160; &#160; 302&#160; &#160; 95&#160; 197&#160; 601&#160; 99.1%&#160; Scaffold33476&#160; ++&#160; &#160; &#160; &#160; 582&#160; &#160; &#160; 1307&#160; &#160; 726</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>browser details SpurP200&#160; &#160; &#160; &#160; 931&#160; &#160; 1&#160; 311&#160; 311 100.0%&#160; Scaffold52488&#160; ++&#160; &#160; 158719&#160; &#160; 162177&#160; 3459</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>browser details SpurP200&#160; &#160; &#160; &#160; 931&#160; &#160; 1&#160; 311&#160; 311 100.0%&#160; Scaffold52488&#160; ++&#160; &#160; 158719&#160; &#160; 162177&#160; 3459 <ins class="diffchange diffchange-inline">*</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>browser details SpurP200&#160; &#160; &#160; &#160; 919&#160; &#160; 1&#160; 311&#160; 311&#160; 99.4%&#160; Scaffold67922&#160; +-&#160; &#160; &#160; 2504&#160; &#160; &#160; 5486&#160; 2983</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>browser details SpurP200&#160; &#160; &#160; &#160; 919&#160; &#160; 1&#160; 311&#160; 311&#160; 99.4%&#160; Scaffold67922&#160; +-&#160; &#160; &#160; 2504&#160; &#160; &#160; 5486&#160; 2983</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>2. <del class="diffchange diffchange-inline">Then, we obtained the genomic sequences </del>and BLAT <del class="diffchange diffchange-inline">them</del>.</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>2. <ins class="diffchange diffchange-inline">To find out whether Scaffold86115 </ins>and <ins class="diffchange diffchange-inline">Scaffold20002 are identical, </ins>BLAT <ins class="diffchange diffchange-inline">Scaffold86115: 132767-134498. They have slight differences:</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>&#160;</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">ACTIONS&#160; &#160; &#160; QUERY&#160; &#160; &#160; &#160; &#160; SCORE START&#160; END QSIZE IDENTITY CHRO STRAND&#160; START&#160; &#160; END&#160; &#160; &#160; SPAN</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>&#160;</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">browser details strPur2_dna&#160; &#160; 1732&#160; &#160; 1&#160; 1732&#160; 1732 100.0%&#160; Scaffold86115&#160; +&#160; &#160; 132767&#160; &#160; 134498&#160; 1732</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>&#160;</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">browser details strPur2_dna&#160; &#160; 1710&#160; &#160; 1&#160; 1732&#160; 1732&#160; 99</ins>.<ins class="diffchange diffchange-inline">2%&#160; Scaffold20002&#160; -&#160; &#160; &#160; 4103&#160; &#160; &#160; 5826&#160; 1724</ins></div></td></tr> </table> Mark http://www.phosphatome.net/wiki/index.php?title=Phosphatase_GeneID_SpurP124&diff=3029&oldid=prev Mark at 22:24, 29 September 2015 2015-09-29T22:24:22Z <p></p> <table class='diff diff-contentalign-left'> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr style='vertical-align: top;'> <td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td> <td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 22:24, 29 September 2015</td> </tr><tr><td colspan="2" class="diff-lineno">Line 1:</td> <td colspan="2" class="diff-lineno">Line 1:</td></tr> <tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>SpurP124, SpurP125, SpurP126 are partially identical in protein sequence. To find out whether they are encoded by different genes:</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>SpurP124, SpurP125, SpurP126<ins class="diffchange diffchange-inline">, Spur200 </ins>are partially identical in protein sequence. To find out whether they are encoded by different genes:</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>1. BLAT the three sequences. SpurP124 is encoded by Scaffold67922 <del class="diffchange diffchange-inline">or Scaffold52488</del>; SpurP125 is encoded by Scaffold20002; SpurP126 is encoded by Scaffold86115.</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>1. BLAT the three sequences. SpurP124 is encoded by Scaffold67922; SpurP125 is encoded by Scaffold20002; SpurP126 is encoded by Scaffold86115<ins class="diffchange diffchange-inline">; SpurP200 is encoded by Scaffold52488</ins>.</div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>Below are BLAT results:</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>Below are BLAT results:</div></td></tr> <tr><td colspan="2" class="diff-lineno">Line 23:</td> <td colspan="2" class="diff-lineno">Line 23:</td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>browser details SpurP126&#160; &#160; &#160; &#160; 302&#160; &#160; 95&#160; 197&#160; 601&#160; 99.1%&#160; Scaffold33476&#160; ++&#160; &#160; &#160; &#160; 582&#160; &#160; &#160; 1307&#160; &#160; 726</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>browser details SpurP126&#160; &#160; &#160; &#160; 302&#160; &#160; 95&#160; 197&#160; 601&#160; 99.1%&#160; Scaffold33476&#160; ++&#160; &#160; &#160; &#160; 582&#160; &#160; &#160; 1307&#160; &#160; 726</div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">browser details SpurP200&#160; &#160; &#160; &#160; 931&#160; &#160; 1&#160; 311&#160; 311 100.0%&#160; Scaffold52488&#160; ++&#160; &#160; 158719&#160; &#160; 162177&#160; 3459</ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr> <tr><td colspan="2">&#160;</td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">browser details SpurP200&#160; &#160; &#160; &#160; 919&#160; &#160; 1&#160; 311&#160; 311&#160; 99.4%&#160; Scaffold67922&#160; +-&#160; &#160; &#160; 2504&#160; &#160; &#160; 5486&#160; 2983</ins></div></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>2. Then, we obtained the genomic sequences and BLAT them.</div></td><td class='diff-marker'>&#160;</td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>2. Then, we obtained the genomic sequences and BLAT them.</div></td></tr> </table> Mark http://www.phosphatome.net/wiki/index.php?title=Phosphatase_GeneID_SpurP124&diff=3028&oldid=prev Mark: Created page with "SpurP124, SpurP125, SpurP126 are partially identical in protein sequence. To find out whether they are encoded by different genes: 1. BLAT the three sequences. SpurP124 is en..." 2015-09-29T21:46:04Z <p>Created page with &quot;SpurP124, SpurP125, SpurP126 are partially identical in protein sequence. To find out whether they are encoded by different genes: 1. BLAT the three sequences. SpurP124 is en...&quot;</p> <p><b>New page</b></p><div>SpurP124, SpurP125, SpurP126 are partially identical in protein sequence. To find out whether they are encoded by different genes:<br /> <br /> 1. BLAT the three sequences. SpurP124 is encoded by Scaffold67922 or Scaffold52488; SpurP125 is encoded by Scaffold20002; SpurP126 is encoded by Scaffold86115.<br /> <br /> Below are BLAT results:<br /> <br /> ACTIONS QUERY SCORE START END QSIZE IDENTITY CHRO STRAND START END SPAN<br /> browser details SpurP124 925 1 309 448 100.0% Scaffold67922 +- 2510 5486 2977<br /> <br /> browser details SpurP124 913 1 309 448 99.4% Scaffold52488 ++ 158719 162171 3453<br /> <br /> browser details SpurP124 412 311 448 448 100.0% Scaffold86115 +- 132767 134495 1729<br /> <br /> browser details SpurP124 412 311 448 448 100.0% Scaffold20002 ++ 4106 5826 1721<br /> <br /> browser details SpurP125 415 1 139 139 100.0% Scaffold86115 +- 132767 134498 1732<br /> <br /> browser details SpurP125 415 1 139 139 100.0% Scaffold20002 ++ 4103 5826 1724<br /> <br /> browser details SpurP126 1752 10 601 601 99.8% Scaffold86115 +- 132767 227975 95209<br /> <br /> browser details SpurP126 415 463 601 601 100.0% Scaffold20002 ++ 4103 5826 1724<br /> <br /> browser details SpurP126 302 95 197 601 99.1% Scaffold33476 ++ 582 1307 726<br /> <br /> 2. Then, we obtained the genomic sequences and BLAT them.</div> Mark