http://www.phosphatome.net/wiki/index.php?action=history&feed=atom&title=Phosphatase_Sequence_MbreP126_AAPhosphatase Sequence MbreP126 AA - Revision history2026-04-12T15:43:43ZRevision history for this page on the wikiMediaWiki 1.22.4http://www.phosphatome.net/wiki/index.php?title=Phosphatase_Sequence_MbreP126_AA&diff=4065&oldid=prevGerard at 17:36, 13 March 20172017-03-13T17:36:21Z<p></p>
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<td colspan='2' style="background-color: white; color:black; text-align: center;">← Older revision</td>
<td colspan='2' style="background-color: white; color:black; text-align: center;">Revision as of 17:36, 13 March 2017</td>
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<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>=== Version 1.0 ===</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>=== Version 1.0 ===</div></td></tr>
<tr><td class='diff-marker'>−</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>The sequence is built based upon the JGI gene model [http://genome.jgi.doe.gov/cgi-bin/dispGeneModel?db=Monbr1&id=32612 estExt_fgenesh2_pg.C_120014]. The sequence is different, though. The sequence has both <del class="diffchange diffchange-inline">PPPc </del>and EF domains.</div></td><td class='diff-marker'>+</td><td style="color:black; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>The sequence is built based upon the JGI gene model [http://genome.jgi.doe.gov/cgi-bin/dispGeneModel?db=Monbr1&id=32612 estExt_fgenesh2_pg.C_120014]. The sequence is different, though. The sequence has both <ins class="diffchange diffchange-inline">PPP </ins>and EF domains.</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>   </div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>   </div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>  MRHLPIGWCRQIQSRQVFVPRRKATPWSSACLHCWQERDTTIITTTTTTRGEQRSNNMDAILRNPSLNSRNGPFNANVNPRHACTSTGRIQSSHCKNKSLYGVTRRSEAQIRRHLTSHLTSQDPTQDMGTNMAFSFRPIAHQTYKHRRRHHKMQALLTSYQAKVDAYTRARHPAALIVCPCTSALSGPAGVFAFVAPIDSWELAMAWGRLAVRRAAAAVNPCLRCSRPLPRVQGLQSRHLLHTFPAIGHFTDAAGKLENHDRFCLVHTEPLTFAAVFDGHGGDAVAQLAADHFEHQLTSLTPPLQETPPALLLRILQDIGAQWDELYAQHGLRAGTTATCAIVRDDALYLAQVGDSQALLYRDNELRPVTPSHRPEDPDEEARILAAGGRITWRGTPRVNGDLSMTRALGACHLRAAGVISDPALVSLELHQDDAFLCLATDGVLDVVLPQEIVALCQQSGSPEAAAKAIGELALAYGSPDNTTVLILPLAGWHAFQKRPPISLPVRNLARRTSKPLMMMLRWAKGVARLPRARAVAVSLRGVSRYQSTAVAAAVAGSQNQSGRRVDGRWIGAALAALVTGALAPQALLEEASAKSEGDKDSGSNGFRDRTISEYEDRIRYYSEPNKVFRYFATVEIDGVVYMRPEDFVRAVTPGQRQPTELGLDIFEKKGSHFGSVTSSSVKRPLFAHNDQGERNMSHSITPIISHLISSPSPLTRSYRAGELNRDKDAGLISYEEFLFLLTALSSPPRQFELAFKMFDLDGNGVVDLVEFAQVQQAVQAKHPVGKRLPMTDCGLVNADVLQRSPMLQRFFGSRGNKKLTFEAFRQFMDESVPWPPANHGRSLPHVHVETVCKEMGTELTAMWVQEDILRLDFIRSNAGATDALVMSQARFARLLLRYTRMRNNEVAAHVSRLDPEDKTPIKYEQAHKFFKCMRRVDDLELALALYHASGSGVGPEELTKAIRVATEIELDASFVKFLFDLFDQDGDGQLSEVEFIKVMKDARSRGLNKRQADLTKISTNRMRVYKWKPPAAVAELVGAELSDIVIVSLGSKVEERGRSKGRSQMAV</div></td><td class='diff-marker'> </td><td style="background-color: #f9f9f9; color: #333333; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #e6e6e6; vertical-align: top; white-space: pre-wrap;"><div>  MRHLPIGWCRQIQSRQVFVPRRKATPWSSACLHCWQERDTTIITTTTTTRGEQRSNNMDAILRNPSLNSRNGPFNANVNPRHACTSTGRIQSSHCKNKSLYGVTRRSEAQIRRHLTSHLTSQDPTQDMGTNMAFSFRPIAHQTYKHRRRHHKMQALLTSYQAKVDAYTRARHPAALIVCPCTSALSGPAGVFAFVAPIDSWELAMAWGRLAVRRAAAAVNPCLRCSRPLPRVQGLQSRHLLHTFPAIGHFTDAAGKLENHDRFCLVHTEPLTFAAVFDGHGGDAVAQLAADHFEHQLTSLTPPLQETPPALLLRILQDIGAQWDELYAQHGLRAGTTATCAIVRDDALYLAQVGDSQALLYRDNELRPVTPSHRPEDPDEEARILAAGGRITWRGTPRVNGDLSMTRALGACHLRAAGVISDPALVSLELHQDDAFLCLATDGVLDVVLPQEIVALCQQSGSPEAAAKAIGELALAYGSPDNTTVLILPLAGWHAFQKRPPISLPVRNLARRTSKPLMMMLRWAKGVARLPRARAVAVSLRGVSRYQSTAVAAAVAGSQNQSGRRVDGRWIGAALAALVTGALAPQALLEEASAKSEGDKDSGSNGFRDRTISEYEDRIRYYSEPNKVFRYFATVEIDGVVYMRPEDFVRAVTPGQRQPTELGLDIFEKKGSHFGSVTSSSVKRPLFAHNDQGERNMSHSITPIISHLISSPSPLTRSYRAGELNRDKDAGLISYEEFLFLLTALSSPPRQFELAFKMFDLDGNGVVDLVEFAQVQQAVQAKHPVGKRLPMTDCGLVNADVLQRSPMLQRFFGSRGNKKLTFEAFRQFMDESVPWPPANHGRSLPHVHVETVCKEMGTELTAMWVQEDILRLDFIRSNAGATDALVMSQARFARLLLRYTRMRNNEVAAHVSRLDPEDKTPIKYEQAHKFFKCMRRVDDLELALALYHASGSGVGPEELTKAIRVATEIELDASFVKFLFDLFDQDGDGQLSEVEFIKVMKDARSRGLNKRQADLTKISTNRMRVYKWKPPAAVAELVGAELSDIVIVSLGSKVEERGRSKGRSQMAV</div></td></tr>
</table>Gerardhttp://www.phosphatome.net/wiki/index.php?title=Phosphatase_Sequence_MbreP126_AA&diff=2912&oldid=prevMark: Created page with "=== Version 1.1 === The EF-containing region probably belong to another gene, orthologous to human [http://www.ncbi.nlm.nih.gov/gene/?term=10367 MICU1], mitochondrial calcium ..."2015-09-11T04:48:15Z<p>Created page with "=== Version 1.1 === The EF-containing region probably belong to another gene, orthologous to human [http://www.ncbi.nlm.nih.gov/gene/?term=10367 MICU1], mitochondrial calcium ..."</p>
<p><b>New page</b></p><div>=== Version 1.1 ===<br />
The EF-containing region probably belong to another gene, orthologous to human [http://www.ncbi.nlm.nih.gov/gene/?term=10367 MICU1], mitochondrial calcium uptake 1. We therefore split the sequence V 1.0 into two genes, the first one of which is the phosphatase, Monosiga PPM1K.<br />
<br />
MRHLPIGWCRQIQSRQVFVPRRKATPWSSACLHCWQERDTTIITTTTTTRGEQRSNNMDAILRNPSLNSRNGPFNANVNPRHACTSTGRIQSSHCKNKSLYGVTRRSEAQIRRHLTSHLTSQDPTQDMGTNMAFSFRPIAHQTYKHRRRHHKMQALLTSYQAKVDAYTRARHPAALIVCPCTSALSGPAGVFAFVAPIDSWELAMAWGRLAVRRAAAAVNPCLRCSRPLPRVQGLQSRHLLHTFPAIGHFTDAAGKLENHDRFCLVHTEPLTFAAVFDGHGGDAVAQLAADHFEHQLTSLTPPLQETPPALLLRILQDIGAQWDELYAQHGLRAGTTATCAIVRDDALYLAQVGDSQALLYRDNELRPVTPSHRPEDPDEEARILAAGGRITWRGTPRVNGDLSMTRALGACHLRAAGVISDPALVSLELHQDDAFLCLATDGVLDVVLPQEIVALCQQSGSPEAAAKAIGELALAYGSPDNTTVLILPLAGWHAFQKRPPISLPVRNLARR<br />
<br />
Technical note:<br />
<br />
We BLASTed the version 1.0 sequence against NR and by sequence comparison, estimated the phosphatase gene probably ended around position 516 of version 1.0 sequence. Meanwhile, we used GENEWISE to find the intron-exon structure. The genomic sequence was obtained by TBLASTNing version 1.0 sequence against masked scaffold sequence via [http://genome.jgi.doe.gov/pages/blast-query.jsf?db=Monbr1 JGI server], fetching the sequence by clicking the hit and downloading from genome browser. We finally split the gene model at the intron 4, position 512.<br />
<br />
=== Version 1.0 ===<br />
The sequence is built based upon the JGI gene model [http://genome.jgi.doe.gov/cgi-bin/dispGeneModel?db=Monbr1&id=32612 estExt_fgenesh2_pg.C_120014]. The sequence is different, though. The sequence has both PPPc and EF domains.<br />
<br />
MRHLPIGWCRQIQSRQVFVPRRKATPWSSACLHCWQERDTTIITTTTTTRGEQRSNNMDAILRNPSLNSRNGPFNANVNPRHACTSTGRIQSSHCKNKSLYGVTRRSEAQIRRHLTSHLTSQDPTQDMGTNMAFSFRPIAHQTYKHRRRHHKMQALLTSYQAKVDAYTRARHPAALIVCPCTSALSGPAGVFAFVAPIDSWELAMAWGRLAVRRAAAAVNPCLRCSRPLPRVQGLQSRHLLHTFPAIGHFTDAAGKLENHDRFCLVHTEPLTFAAVFDGHGGDAVAQLAADHFEHQLTSLTPPLQETPPALLLRILQDIGAQWDELYAQHGLRAGTTATCAIVRDDALYLAQVGDSQALLYRDNELRPVTPSHRPEDPDEEARILAAGGRITWRGTPRVNGDLSMTRALGACHLRAAGVISDPALVSLELHQDDAFLCLATDGVLDVVLPQEIVALCQQSGSPEAAAKAIGELALAYGSPDNTTVLILPLAGWHAFQKRPPISLPVRNLARRTSKPLMMMLRWAKGVARLPRARAVAVSLRGVSRYQSTAVAAAVAGSQNQSGRRVDGRWIGAALAALVTGALAPQALLEEASAKSEGDKDSGSNGFRDRTISEYEDRIRYYSEPNKVFRYFATVEIDGVVYMRPEDFVRAVTPGQRQPTELGLDIFEKKGSHFGSVTSSSVKRPLFAHNDQGERNMSHSITPIISHLISSPSPLTRSYRAGELNRDKDAGLISYEEFLFLLTALSSPPRQFELAFKMFDLDGNGVVDLVEFAQVQQAVQAKHPVGKRLPMTDCGLVNADVLQRSPMLQRFFGSRGNKKLTFEAFRQFMDESVPWPPANHGRSLPHVHVETVCKEMGTELTAMWVQEDILRLDFIRSNAGATDALVMSQARFARLLLRYTRMRNNEVAAHVSRLDPEDKTPIKYEQAHKFFKCMRRVDDLELALALYHASGSGVGPEELTKAIRVATEIELDASFVKFLFDLFDQDGDGQLSEVEFIKVMKDARSRGLNKRQADLTKISTNRMRVYKWKPPAAVAELVGAELSDIVIVSLGSKVEERGRSKGRSQMAV</div>Mark